Issues and problems specifically with using AG under Wine.

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(most serious)

Something about the font handling, whether in AG or more likely in the
IBM class library, does not get along with Wine.  Consequently,
everything appears only in some crappy default font and nothing you do
with the Set Fonts dialog has any effect.

This makes marked tokens indistiguishable from unmarked tokens, which
means you can't tell where you are in the Grammar Trace and File Trace
and thus makes those windows nearly impossible to use. This in turn
makes AG almost useless in Wine.

Possible workaround: could reenable the old code for putting marked
tokens in <>. But this should be either user-switchable or based on
having detected wine. Blah.

Another possible workaround: change the text color for marked tokens.

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When you click on an open AG window name from the Windows menu of
the AG control panel, the window does not come to the foreground. If
completely hidden, it will remain so.

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Various weird things happen with control of the window focus,
window icons, window titles, raising and lowering windows, and other
things that interact with the window manager in X.

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In Wine it doesn't seem to notice when the syntax file has been
changed underneath it. I'm reasonably sure that in Windows it does and
that this feature wasn't limited to the DOS version. (I think it
normally checks when it receives the window focus, which is
problematic as per the previous issue.)

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The icon for the Analyze Grammar button often fails to display or
refresh if covered and uncovered. (The other buttons are sometimes
affected too, but mostly only the Analyze Grammar button gets messed
up without provocation.) I'm sure this is a Wine issue, but it would
be nice if it didn't break.

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AG does not work at all in Wine on NetBSD. Neither do various other
things; the problems is/are in Wine, not AG. See 
http://www.netbsd.org/cgi-bin/query-pr-single.pl?number=32800
for some further information.